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CudenDB
Java Object Database. It have simple interface like: 'store', 'get', 'delete', and 'query'. BTree algorithm is used for storing and searching. Indexes to allow for fast search. Transactions: 'beginTransactions', 'endTransactions', 'commit', and 'rollback'.
db4o
Object database in Java for Java. [Free for non-commercial]
FastObjects j2
A pure Java object database (ODBMS) component embedded into Java applications to provide object persistence. The j2 OODB is compliant with JDO and is designed for use in embedded systems.
Jeevan
100% pure Java Object Oriented Database, with a simple API and no schema definition language. [Commercial]
JYD Object Database
Pure object DBMS written entirely in Java. Multi-user with client-server support and garbage collection. [Commercial]
ObjectStore
A complex data management and real-time event processing application for Java and C++ applications.
Ozone
Open source Java Object Database Management System (ODBMS), with multi-user support, object-level access rights, deadlock detection, and XML/DOM support. [Open Source, GPL/LGPL]
PJODe - ODBMS for Java
Small footprint ODBMS for Java, written in Java. Simple API and customizable query interface. [Free for non-commercial]
Sieben Geisslein
An object store implemented in Java. [Open Source, BSD style]
SOD
Alpha-quality object-oriented database providing ODMG-conforming Java and C++ language bindings, for Windows and Linux. [Free for personal use]
XL2
OODBMS that uses persistent references to scale Java Object Serialization. [Open Source, GPL]